Package: forImage 0.1.0
forImage: Foraminiferal Image Analysis and Test Measurement
The goal of this collection of functions is to provide an easy to use tool for the measurement of foraminifera and other unicellulars organisms size. With functions developed to guide foraminiferal test biovolume calculations and cell biomass estimations. The volume function includes several microalgae models geometric adaptations based on Hillebrand et al. (1999) <doi:10.1046/j.1529-8817.1999.3520403.x>, Sun and Liu (2003) <doi:10.1093/plankt/fbg096> and Vadrucci, Cabrini and Basset (2007) <doi:10.1285/i1825229Xv1n2p83>.
Authors:
forImage_0.1.0.tar.gz
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forImage.pdf |forImage.html✨
forImage/json (API)
| # Install 'forImage' in R: |
| install.packages('forImage', repos = c('https://thaiserf.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thaiserf/forimage/issues
- ammonia - Ammonia size data
- amphistegina - Amphistegina size data
- angulogerina - Angulogerina size data
- asterotrochammina - Asterotrochammina size data
- bolivina - Bolivina size data
- cibicidoides - Cibicidoides size data
- data_pco - Foraminiferal genera data for 'forImage' examples
- discorbinella - Discorbinella size data
- laevipeneroplis - Laevipeneroplis size data
- loxostomina - Loxostomina size data
- nonionella - Nonionella size data
- patellina - Patellina size data
- quinqueloculina - Quinqueloculina size data
- rectocibicides - Rectocibicides size data
- spirillina - Spirillina size data
- textularia - Textularia size data
Last updated 4 years agofrom:f895b91edf. Checks:ERROR: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Oct 10 2024 |
| R-4.5-win | WARNING | Oct 10 2024 |
| R-4.5-linux | WARNING | Oct 10 2024 |
| R-4.4-win | WARNING | Oct 10 2024 |
| R-4.4-mac | WARNING | Oct 10 2024 |
| R-4.3-win | WARNING | Oct 10 2024 |
| R-4.3-mac | WARNING | Oct 10 2024 |
Exports:bio.volumebiomassdepth.xmlinstall_measuremeasurevolume.total
Dependencies:clidplyrfansigenericsglueherejsonlitelatticelifecyclemagrittrMatrixpillarpkgconfigpngR6rappdirsRcppRcppTOMLreticulaterlangrprojroottibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ammonia size data | ammonia |
| Amphistegina size data | amphistegina |
| Angulogerina size data | angulogerina |
| Asterotrochammina size data | asterotrochammina |
| Biovolume calculus | bio.volume |
| Biomass estimative | biomass |
| Bolivina size data | bolivina |
| Cibicidoides size data | cibicidoides |
| Foraminiferal genera data for 'forImage' examples | data_pco |
| Import image object depth (Z) | depth.xml |
| Discorbinella size data | discorbinella |
| Foraminiferal photomicrograph for 'forImage' examples | exampleImage |
| Install python packages dependencies for measure function | install_measure |
| Laevipeneroplis size data | laevipeneroplis |
| Loxostomina size data | loxostomina |
| Foraminifera image measurement | measure |
| Nonionella size data | nonionella |
| Patellina size data | patellina |
| Quinqueloculina size data | quinqueloculina |
| Rectocibicides size data | rectocibicides |
| Spirillina size data | spirillina |
| Textularia size data | textularia |
| Volumetric calculus of organisms | volume.total |
